In Geneious versions 6.0 and above, you can automatically annotate plasmids with common promoters, terminators, cloning sites, restriction sites, reporter genes, affinity tags, selectable marker genes, replication origins and open reading frames. Select Annotate and Predict→Annotate From... (this function is labelled Find Annotations in 6.0) and select PlasMapper Features as the Source. This will annotate plasmids with features found in the database used by PlasMapper. Download and run through the Transferring Annotations tutorial for more information.
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