Thanks for your request, I've forwarded this to the developers
Update CRISPR Design Scoring
The Broad Institute has updated the model for scoring CRISPR targets from the one that is currently used by Geneious (Doench et al 2014) to Doench et al 2016 (below).
Would like to see the new model for scoring reflected in Geneious.
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More updates to on-target scoring.
WU-CRISPR and TUSCAN might both be worth adding to the available options