Thanks for your suggestion. I have submitted a feature request to our developers for the ability to number sequences based on custom "reference-based" numbering schemes.
Custom numbering format with insertion codes
Custom sequencing numbering support. You can renumber the sequence starting with a number, but what about using a completely different numbering scheme. For example.
Antibodies - Kabat, IMGT, Chothia
HIV - HXBC2 numbering format.
If the user could just submit a numbering scheme with insertion codes rather than "renumber starting with", the user could probably handle it from there.
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