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How to export SNPs genotypes and allele frequencies from separate fastq files at once?

I have genotyped several SNPs in a large number of DNA samples through next-generation sequencing. Is there an option to export from Geneious the SNPs genotypes with allele frequencies of all the libraries at once (each library is in a separate fastq file)?

Justyna Horodyska

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If you want to do VCF export, then you can only export a single sample at once.  

However, if your reads from each fastq file are mapped to the same reference sequence, and you have saved the variant annotation tracks onto the reference sequence, then you can display them all at once in the Annotations table and export them all in csv format in one go.  To display all tracks in the table, make sure "Track" is set to "All".  

Hilary Miller -1 votes