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chromosome translocation from NGS

Hi,

I wonder if Geneious can detect chromosome translocations from WGS data (mate pair or paired end).

Thanks

Tamas

 

T R

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You may be able to use the read mapper with the option "Find structural variants, short insertions and deletions of any size" enabled.  This will map reads that align to different regions of the reference and annotate the junctions so you can see the points where there are potentially structural rearrangements. 

Hilary Miller 0 votes